That can happen when the die is used for a long time and gets damaged. They are call cuds. This illustrates what is happening (I used an 8 rather than the 9) looking at a cross section through the top of the 8. Normal undamaged die:
The die gets damaged with use and part between the top of the 8 breaks off leaving material in the middle:
It's a fairly common occurrence and doesn't add significantly to the value.